Variant report

Variant	rs6854151
Chromosome Location	chr4:110299443-110299444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110287703..110291909-chr4:110296308..110299506,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10002595	0.86[MEX][hapmap]
rs10016533	0.86[MEX][hapmap]
rs11929713	0.85[MEX][hapmap]
rs11933172	0.85[MEX][hapmap]
rs11942858	0.85[MEX][hapmap]
rs13103034	0.85[MEX][hapmap]
rs13110999	0.85[CEU][hapmap];0.85[MEX][hapmap]
rs13122093	0.85[CEU][hapmap];0.85[MEX][hapmap]
rs13123618	0.86[MEX][hapmap]
rs13128445	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs13140373	0.85[CEU][hapmap];0.85[MEX][hapmap]
rs13141018	0.91[EUR][1000 genomes]
rs13142698	0.86[MEX][hapmap]
rs13145066	0.85[MEX][hapmap]
rs13147221	0.91[EUR][1000 genomes]
rs13147935	0.86[EUR][1000 genomes]
rs17040388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040390	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040436	0.85[MEX][hapmap]
rs17040439	0.85[MEX][hapmap]
rs17040461	0.85[MEX][hapmap]
rs28681408	0.86[MEX][hapmap]
rs34011966	0.97[EUR][1000 genomes]
rs34286241	0.91[EUR][1000 genomes]
rs34839743	0.91[EUR][1000 genomes]
rs35525444	0.92[EUR][1000 genomes]
rs6533434	0.86[MEX][hapmap]
rs66650623	0.92[EUR][1000 genomes]
rs6818911	0.86[MEX][hapmap]
rs6825928	1.00[MEX][hapmap]
rs6826810	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6835683	0.86[MEX][hapmap]
rs6841198	0.86[MEX][hapmap]
rs714586	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs7436583	0.86[MEX][hapmap]
rs7675602	0.86[MEX][hapmap]
rs7681671	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691652	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9999570	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110298600-110299600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110299400-110299600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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