Variant report
| Variant | rs13128445 |
|---|---|
| Chromosome Location | chr4:110228717-110228718 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110218875..110221390-chr4:110226425..110229049,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10002595 | 0.85[MEX][hapmap] |
| rs10016533 | 0.85[MEX][hapmap] |
| rs11933172 | 1.00[MEX][hapmap] |
| rs11942858 | 1.00[MEX][hapmap] |
| rs13103034 | 1.00[MEX][hapmap] |
| rs13110999 | 0.85[CEU][hapmap];1.00[MEX][hapmap] |
| rs13122093 | 0.85[CEU][hapmap];1.00[MEX][hapmap] |
| rs13123618 | 0.85[MEX][hapmap] |
| rs13141018 | 0.85[EUR][1000 genomes] |
| rs13142698 | 0.85[MEX][hapmap] |
| rs13147221 | 0.85[EUR][1000 genomes] |
| rs13147935 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17040388 | 0.91[EUR][1000 genomes] |
| rs17040390 | 0.91[EUR][1000 genomes] |
| rs17040436 | 1.00[MEX][hapmap] |
| rs17040439 | 1.00[MEX][hapmap] |
| rs17040461 | 1.00[MEX][hapmap] |
| rs28681408 | 0.85[MEX][hapmap] |
| rs34011966 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34286241 | 0.83[EUR][1000 genomes] |
| rs34839743 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35525444 | 0.85[EUR][1000 genomes] |
| rs66650623 | 0.85[EUR][1000 genomes] |
| rs6825928 | 1.00[MEX][hapmap] |
| rs6826810 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6835683 | 0.85[MEX][hapmap] |
| rs6841198 | 0.85[MEX][hapmap] |
| rs6854151 | 0.91[EUR][1000 genomes] |
| rs714586 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7436583 | 0.85[MEX][hapmap] |
| rs7675602 | 0.85[MEX][hapmap] |
| rs7681671 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7691652 | 0.96[EUR][1000 genomes] |
| rs9999570 | 0.85[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461613 | chr4:109922064-110593460 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv595129 | chr4:109922064-110593460 | Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv515893 | chr4:110222845-110254841 | Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
