Variant report

Variant	nsv968019
Chromosome Location	chr4:160646974-160653132
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7439691	chr4:160647052-160647053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs17319860	chr4:160647109-160647110	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs575112485	chr4:160647129-160647130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568704175	chr4:160647140-160647141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs7684510	chr4:160647176-160647177	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs535806417	chr4:160647206-160647207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113901621	chr4:160647251-160647252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547801462	chr4:160647262-160647263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189489347	chr4:160647270-160647271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565786995	chr4:160647290-160647291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs534835078	chr4:160647293-160647294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs553538264	chr4:160647320-160647321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs568185578	chr4:160647396-160647397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs1976456	chr4:160647546-160647547	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs556396861	chr4:160647562-160647563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs72971147	chr4:160647586-160647587	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs192150110	chr4:160647603-160647604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185075856	chr4:160647618-160647619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188508720	chr4:160647666-160647667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs28493940	chr4:160647738-160647739	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs114872384	chr4:160647743-160647744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564500446	chr4:160647778-160647779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs537200000	chr4:160647782-160647783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533540669	chr4:160647905-160647906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550120778	chr4:160647923-160647924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7690659	chr4:160647950-160647951	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs138441999	chr4:160647989-160647990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548960423	chr4:160648026-160648027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs573850325	chr4:160648056-160648057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs565774448	chr4:160648058-160648059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs534780991	chr4:160648153-160648154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs551490213	chr4:160648173-160648174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs571674417	chr4:160648174-160648175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs142947664	chr4:160648203-160648204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs181652877	chr4:160648229-160648230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs115985965	chr4:160648289-160648290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs535796499	chr4:160648296-160648297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540944185	chr4:160648317-160648318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs555393951	chr4:160648325-160648326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs546718477	chr4:160648347-160648348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs375731716	chr4:160648381-160648382	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	20409316	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	19805367	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160644800-160648000	Weak transcription	Pancreas	Pancrea
2	chr4:160648000-160648400	Enhancers	Pancreas	Pancrea

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