Variant report

Variant	nsv968024
Chromosome Location	chr4:173604337-173609980
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173609516..173610288-chr4:173751358..173752025,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558293594	chr4:173604367-173604368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs1437841	chr4:173604368-173604369	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs74838725	chr4:173604371-173604372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs561073053	chr4:173604544-173604545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs17308958	chr4:173604546-173604547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs139261620	chr4:173604550-173604551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563294726	chr4:173604677-173604678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9994123	chr4:173604693-173604694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149991789	chr4:173604714-173604715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs6838201	chr4:173604722-173604723	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs56144313	chr4:173604734-173604735	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs548856909	chr4:173604759-173604760	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs116717102	chr4:173604765-173604766	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs537427929	chr4:173604766-173604767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs187447955	chr4:173604812-173604813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs569321306	chr4:173604843-173604844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs11730738	chr4:173604852-173604853	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs6839897	chr4:173604864-173604865	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs191591113	chr4:173604872-173604873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs572200946	chr4:173604913-173604914	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184112632	chr4:173604924-173604925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs554832593	chr4:173604935-173604936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs115411419	chr4:173604936-173604937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs543756624	chr4:173604972-173604973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs189139180	chr4:173605009-173605010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs576913638	chr4:173605019-173605020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs545913461	chr4:173605020-173605021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs376598700	chr4:173605056-173605057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs559225748	chr4:173605182-173605183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs528672807	chr4:173605191-173605192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs192810264	chr4:173605204-173605205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs548524733	chr4:173605220-173605221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs184370110	chr4:173605231-173605232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs6840747	chr4:173605237-173605238	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs550869768	chr4:173605247-173605248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs570465890	chr4:173605251-173605252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs566126693	chr4:173605265-173605266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs538287700	chr4:173605273-173605274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs190480358	chr4:173605277-173605278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs35780525	chr4:173605278-173605279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs145234454	chr4:173605286-173605287	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs142480933	chr4:173605332-173605333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs554104001	chr4:173605345-173605346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs535967454	chr4:173605352-173605353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs146743365	chr4:173605380-173605381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs574585800	chr4:173605383-173605384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs147931647	chr4:173605413-173605414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs557341156	chr4:173605481-173605482	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs141830205	chr4:173605488-173605489	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs143828792	chr4:173605506-173605507	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Neuroblastoma	16790693	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	22127048	CNVD
Glioblastoma multiforme	22286061	CNVD
Neuroblastoma	21899760	CNVD
Gastric adenocarcinoma	19115996	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173601600-173606000	Enhancers	Placenta Amnion	Placenta Amnion

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