Variant report

Variant	rs11730738
Chromosome Location	chr4:173604852-173604853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10016257	1.00[YRI][hapmap]
rs10026450	0.91[CEU][hapmap]
rs10029955	0.93[EUR][1000 genomes]
rs10031202	0.96[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10050292	1.00[YRI][hapmap]
rs1074144	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs11729518	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11734921	0.85[CEU][hapmap]
rs12645987	0.83[CEU][hapmap]
rs13104048	0.95[YRI][hapmap]
rs13138074	0.92[YRI][hapmap]
rs13152161	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1347703	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1370572	0.92[CEU][hapmap]
rs1378312	0.87[CEU][hapmap]
rs1437836	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs1437843	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1437844	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs1437845	0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1437855	0.95[YRI][hapmap]
rs1455120	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1455129	0.91[CEU][hapmap]
rs1540475	1.00[YRI][hapmap]
rs1551447	0.91[CEU][hapmap]
rs1561305	0.96[YRI][hapmap]
rs1658515	0.87[CEU][hapmap]
rs17052104	0.96[YRI][hapmap]
rs17058691	0.92[CEU][hapmap]
rs17235632	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2043780	0.96[YRI][hapmap]
rs2196669	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2332544	0.83[CEU][hapmap]
rs2332549	0.84[YRI][hapmap]
rs28579160	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs28727534	0.80[EUR][1000 genomes]
rs337979	1.00[JPT][hapmap]
rs338036	1.00[JPT][hapmap]
rs34364219	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4315754	0.96[YRI][hapmap]
rs4396969	0.96[YRI][hapmap]
rs4414931	0.85[YRI][hapmap]
rs4695893	0.83[CEU][hapmap]
rs6553639	0.92[CEU][hapmap]
rs6553640	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs67168311	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6830773	0.96[YRI][hapmap]
rs6833340	0.92[CEU][hapmap]
rs6853969	0.81[EUR][1000 genomes]
rs716645	0.96[YRI][hapmap]
rs716646	1.00[YRI][hapmap]
rs7664781	0.88[CEU][hapmap]
rs7668615	1.00[JPT][hapmap]
rs7668989	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7669486	0.81[AFR][1000 genomes]
rs7671314	0.91[CEU][hapmap]
rs7673000	0.95[EUR][1000 genomes]
rs7691283	0.92[CEU][hapmap]
rs7692814	0.92[CEU][hapmap]
rs7693019	0.92[CEU][hapmap]
rs837189	0.84[CEU][hapmap]
rs9996298	0.91[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv968024	chr4:173604337-173609980	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173601600-173606000	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links