Variant report

Variant	rs13152161
Chromosome Location	chr4:173557532-173557533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-13	chr4:173555835-173557753	NONHSAT099210

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10016257	1.00[CHB][hapmap]
rs10026450	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs10029955	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031202	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050292	1.00[CHB][hapmap]
rs1074144	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132960	1.00[CHB][hapmap]
rs11729518	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11730738	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11735233	1.00[CHB][hapmap]
rs11736072	1.00[CHB][hapmap]
rs12645987	0.88[CEU][hapmap]
rs13104048	1.00[CHB][hapmap]
rs13134091	1.00[ASN][1000 genomes]
rs13138074	1.00[CHB][hapmap]
rs1347703	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1370572	0.81[CEU][hapmap]
rs1378312	0.95[CEU][hapmap]
rs1437836	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs1437843	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437844	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437845	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1437854	1.00[CHB][hapmap]
rs1437855	1.00[CHB][hapmap]
rs1437856	1.00[CHB][hapmap]
rs1455120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455129	1.00[CEU][hapmap]
rs1540475	1.00[CHB][hapmap]
rs1551447	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs1561305	1.00[CHB][hapmap]
rs1658515	0.88[CEU][hapmap]
rs17052104	1.00[CHB][hapmap]
rs17058691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs17235632	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2043780	1.00[CHB][hapmap]
rs2196669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332544	0.88[CEU][hapmap]
rs2332549	1.00[CHB][hapmap]
rs28579160	1.00[ASN][1000 genomes]
rs28727534	1.00[ASN][1000 genomes]
rs34364219	1.00[ASN][1000 genomes]
rs4315754	1.00[CHB][hapmap]
rs4396969	1.00[CHB][hapmap]
rs4414931	1.00[CHB][hapmap]
rs4431209	1.00[CHB][hapmap]
rs4695893	0.88[CEU][hapmap]
rs6553639	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs6553640	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168311	1.00[ASN][1000 genomes]
rs6830773	1.00[CHB][hapmap]
rs6833340	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs6853969	1.00[ASN][1000 genomes]
rs716645	1.00[CHB][hapmap]
rs716646	1.00[CHB][hapmap]
rs73869602	0.82[ASN][1000 genomes]
rs7664781	0.96[CEU][hapmap]
rs7668989	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7669486	1.00[ASN][1000 genomes]
rs7671314	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs7673000	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677835	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7691283	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs7692814	1.00[CEU][hapmap]
rs7693019	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs837189	0.88[CEU][hapmap]
rs9992901	1.00[CHB][hapmap]
rs9996298	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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