Variant report

Variant	rs1455120
Chromosome Location	chr4:173569281-173569282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10016257	1.00[CHB][hapmap]
rs10026450	1.00[CEU][hapmap];0.83[GIH][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap]
rs10029955	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031202	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050292	1.00[CHB][hapmap]
rs1074144	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132960	1.00[CHB][hapmap]
rs11729518	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11730738	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs11735233	1.00[CHB][hapmap]
rs11736072	1.00[CHB][hapmap]
rs12645987	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs13104048	1.00[CHB][hapmap]
rs13134091	1.00[ASN][1000 genomes]
rs13138074	1.00[CHB][hapmap]
rs13152161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347703	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1370572	0.80[CEU][hapmap]
rs1378312	0.95[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs1437836	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs1437843	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437844	0.83[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437845	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.88[TSI][hapmap];0.92[ASN][1000 genomes]
rs1437854	1.00[CHB][hapmap]
rs1437855	1.00[CHB][hapmap]
rs1437856	1.00[CHB][hapmap]
rs1455129	1.00[CEU][hapmap];0.90[GIH][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap]
rs1540475	1.00[CHB][hapmap]
rs1551447	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap]
rs1561305	1.00[CHB][hapmap]
rs1658515	0.87[CEU][hapmap]
rs17052104	1.00[CHB][hapmap]
rs17058691	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17235632	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2043780	1.00[CHB][hapmap]
rs2196669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332544	0.88[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs2332549	1.00[CHB][hapmap]
rs28579160	1.00[ASN][1000 genomes]
rs28727534	1.00[ASN][1000 genomes]
rs34364219	1.00[ASN][1000 genomes]
rs4315754	1.00[CHB][hapmap]
rs4396969	1.00[CHB][hapmap]
rs4414931	1.00[CHB][hapmap]
rs4431209	1.00[CHB][hapmap]
rs4695893	0.87[CEU][hapmap]
rs6553639	1.00[CEU][hapmap]
rs6553640	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168311	1.00[ASN][1000 genomes]
rs6830773	1.00[CHB][hapmap]
rs6833340	1.00[CEU][hapmap]
rs6853969	1.00[ASN][1000 genomes]
rs716645	1.00[CHB][hapmap]
rs716646	1.00[CHB][hapmap]
rs73869602	0.82[ASN][1000 genomes]
rs7664781	0.95[CEU][hapmap]
rs7668989	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7669486	1.00[ASN][1000 genomes]
rs7671314	1.00[CEU][hapmap];0.90[GIH][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap]
rs7673000	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677835	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[ASN][1000 genomes]
rs7691283	1.00[CEU][hapmap]
rs7692814	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7693019	1.00[CEU][hapmap]
rs837189	0.88[CEU][hapmap]
rs9992901	1.00[CHB][hapmap]
rs9996298	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1455120	SAP30	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173569200-173569400	Enhancers	Placenta Amnion	Placenta Amnion

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