Variant report

Variant	rs1370572
Chromosome Location	chr4:173610072-173610073
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173609516..173610288-chr4:173751358..173752025,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10014796	0.90[ASN][1000 genomes]
rs10026450	0.80[CEU][hapmap]
rs10029955	0.93[EUR][1000 genomes]
rs10031202	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10213357	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10222748	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1074144	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11132960	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11730738	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs11734921	0.95[CEU][hapmap]
rs12645987	0.92[CEU][hapmap]
rs13152161	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1347703	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1437836	0.84[CEU][hapmap]
rs1437843	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1437844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1455120	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1455129	0.80[CEU][hapmap]
rs1540473	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1551447	0.80[CEU][hapmap]
rs1595413	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1658515	0.96[CEU][hapmap]
rs17058691	0.81[CEU][hapmap]
rs17235632	0.92[CEU][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1837132	0.90[ASN][1000 genomes]
rs2196669	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2332544	0.92[CEU][hapmap]
rs28552483	0.90[ASN][1000 genomes]
rs28767047	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35170073	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4695893	0.92[CEU][hapmap]
rs6553639	0.81[CEU][hapmap]
rs6553640	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6553648	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6822057	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6833340	0.81[CEU][hapmap]
rs7668989	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs7671314	0.80[CEU][hapmap]
rs7673000	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7691283	0.81[CEU][hapmap]
rs7692814	0.81[CEU][hapmap]
rs7693019	0.81[CEU][hapmap]
rs837189	0.92[CEU][hapmap]
rs9992901	0.90[ASN][1000 genomes]
rs9996298	0.83[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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