Variant report

Variant	rs11132960
Chromosome Location	chr4:173647412-173647413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10012267	1.00[JPT][hapmap]
rs10014796	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016257	1.00[CHB][hapmap]
rs10022095	1.00[JPT][hapmap]
rs10025284	1.00[JPT][hapmap]
rs10029310	1.00[JPT][hapmap]
rs10031191	1.00[JPT][hapmap]
rs10031202	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs10033472	1.00[JPT][hapmap]
rs10050292	1.00[CHB][hapmap]
rs10213357	1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520238	1.00[JPT][hapmap]
rs1074144	1.00[CHB][hapmap]
rs1097574	1.00[JPT][hapmap]
rs11729518	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11734921	1.00[JPT][hapmap]
rs11735233	1.00[CHB][hapmap]
rs11736072	1.00[CHB][hapmap]
rs12108242	1.00[JPT][hapmap]
rs12512892	1.00[JPT][hapmap]
rs12645987	1.00[JPT][hapmap]
rs13104048	1.00[CHB][hapmap]
rs13134091	0.93[EUR][1000 genomes]
rs13138074	1.00[CHB][hapmap]
rs13152161	1.00[CHB][hapmap]
rs1347703	1.00[CHB][hapmap]
rs1370576	1.00[JPT][hapmap]
rs1370577	1.00[JPT][hapmap]
rs1437836	1.00[CHB][hapmap]
rs1437843	1.00[CHB][hapmap]
rs1437844	1.00[CHB][hapmap]
rs1437845	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1437854	1.00[CHB][hapmap]
rs1437856	1.00[CHB][hapmap]
rs1455119	1.00[JPT][hapmap]
rs1455120	1.00[CHB][hapmap]
rs1540473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540474	1.00[JPT][hapmap]
rs1540475	1.00[CHB][hapmap]
rs1540476	1.00[CHB][hapmap]
rs1561305	1.00[CHB][hapmap]
rs1561306	1.00[CHB][hapmap]
rs1561307	1.00[JPT][hapmap]
rs1595413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1658515	1.00[JPT][hapmap]
rs17052104	1.00[CHB][hapmap]
rs17058691	1.00[CHB][hapmap]
rs17058762	1.00[JPT][hapmap]
rs17058765	1.00[JPT][hapmap]
rs17058894	1.00[JPT][hapmap]
rs17058922	1.00[JPT][hapmap]
rs17235632	1.00[JPT][hapmap]
rs1821862	1.00[JPT][hapmap]
rs1837132	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043780	1.00[CHB][hapmap]
rs2083136	1.00[JPT][hapmap]
rs2118443	1.00[JPT][hapmap]
rs2164822	1.00[JPT][hapmap]
rs2164823	1.00[JPT][hapmap]
rs2164824	1.00[JPT][hapmap]
rs2164826	1.00[JPT][hapmap]
rs2196669	1.00[CHB][hapmap]
rs2332544	1.00[JPT][hapmap]
rs2332549	1.00[CHB][hapmap]
rs2332550	1.00[CHB][hapmap]
rs28552483	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579160	0.94[EUR][1000 genomes]
rs28727534	0.94[EUR][1000 genomes]
rs28767047	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364219	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35170073	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345571	1.00[JPT][hapmap]
rs4100737	1.00[JPT][hapmap]
rs4396969	1.00[CHB][hapmap]
rs4414931	1.00[CHB][hapmap]
rs4423855	1.00[JPT][hapmap]
rs4431209	1.00[CHB][hapmap]
rs4572851	1.00[JPT][hapmap]
rs6553640	1.00[CHB][hapmap]
rs6553647	1.00[JPT][hapmap]
rs6553648	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168311	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6811397	1.00[JPT][hapmap]
rs6822057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6826006	1.00[JPT][hapmap]
rs6830773	1.00[CHB][hapmap]
rs6839897	1.00[JPT][hapmap]
rs6841156	1.00[JPT][hapmap]
rs6844959	1.00[JPT][hapmap]
rs6848466	1.00[JPT][hapmap]
rs6853969	0.95[EUR][1000 genomes]
rs716645	1.00[CHB][hapmap]
rs716646	1.00[CHB][hapmap]
rs716647	1.00[JPT][hapmap]
rs7669486	0.88[EUR][1000 genomes]
rs7674050	1.00[JPT][hapmap]
rs7677835	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7686162	1.00[JPT][hapmap]
rs7694956	1.00[JPT][hapmap]
rs7699455	1.00[JPT][hapmap]
rs837189	1.00[JPT][hapmap]
rs837213	1.00[JPT][hapmap]
rs9312528	1.00[JPT][hapmap]
rs9312533	1.00[JPT][hapmap]
rs9884494	1.00[JPT][hapmap]
rs9884518	1.00[JPT][hapmap]
rs9992243	1.00[JPT][hapmap]
rs9992901	1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993208	1.00[JPT][hapmap]
rs9994145	1.00[JPT][hapmap]
rs9995075	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173645200-173649600	Enhancers	Fetal Intestine Small	intestine
2	chr4:173646400-173647800	Active TSS	A549	lung
3	chr4:173646800-173648600	Enhancers	Stomach Mucosa	stomach
4	chr4:173647000-173647800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:173647000-173647800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:173647200-173647600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:173647200-173647600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:173647200-173647600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:173647200-173647600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:173647200-173647600	Enhancers	Pancreas	Pancrea
11	chr4:173647200-173647600	Enhancers	NHDF-Ad	bronchial
12	chr4:173647200-173647800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:173647200-173647800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr4:173647200-173648000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:173647200-173648600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr4:173647400-173648000	Enhancers	Fetal Kidney	kidney
17	chr4:173647400-173648000	Enhancers	HepG2	liver
18	chr4:173647400-173648800	Enhancers	Fetal Intestine Large	intestine

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