Variant report

Variant	rs10031202
Chromosome Location	chr4:173628589-173628590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10016257	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs10026450	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs10029955	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050292	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs10213357	0.80[EUR][1000 genomes]
rs1074144	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132960	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs11729518	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730738	0.96[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11734921	0.90[CEU][hapmap]
rs11735233	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11736072	1.00[CHB][hapmap]
rs12645987	0.85[TSI][hapmap]
rs13104048	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13134091	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138074	1.00[CHB][hapmap];0.96[YRI][hapmap]
rs13152161	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347703	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1370572	0.83[CEU][hapmap]
rs1378312	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs1437836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1437843	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437844	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437845	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1437854	1.00[CHB][hapmap]
rs1437855	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs1437856	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs1455120	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455129	0.88[CEU][hapmap];0.90[TSI][hapmap]
rs1540473	0.80[EUR][1000 genomes]
rs1540474	0.82[MKK][hapmap]
rs1540475	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1551447	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs1561305	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs1561306	0.82[CEU][hapmap]
rs1561307	0.83[MKK][hapmap]
rs1595413	0.80[EUR][1000 genomes]
rs17052104	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17058691	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17235632	0.83[EUR][1000 genomes]
rs1821862	0.80[MKK][hapmap]
rs2043780	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2083136	0.82[MKK][hapmap]
rs2196669	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332544	0.84[TSI][hapmap]
rs2332549	1.00[CHB][hapmap]
rs28579160	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28727534	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364219	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4100737	0.82[MKK][hapmap]
rs4315754	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs4396969	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap]
rs4414931	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4431209	1.00[CHB][hapmap]
rs6553639	0.87[CEU][hapmap]
rs6553640	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553648	0.80[EUR][1000 genomes]
rs67168311	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822057	0.80[EUR][1000 genomes]
rs6830773	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6833340	0.88[CEU][hapmap]
rs6841156	0.82[MKK][hapmap]
rs6853969	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716645	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs716646	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs716647	0.82[MKK][hapmap]
rs73869602	0.82[ASN][1000 genomes]
rs7664781	0.84[CEU][hapmap]
rs7668989	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7669486	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7671314	0.88[CEU][hapmap];0.90[TSI][hapmap]
rs7673000	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674050	0.82[MKK][hapmap]
rs7677835	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[ASN][1000 genomes]
rs7691283	0.88[CEU][hapmap]
rs7692814	0.88[CEU][hapmap]
rs7693019	0.87[CEU][hapmap]
rs9992901	1.00[CHB][hapmap]
rs9995075	0.82[MKK][hapmap]
rs9996298	0.86[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173627000-173629000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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