Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10026450	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap]
rs10031202	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs11730738	0.87[CEU][hapmap]
rs12645987	0.83[CEU][hapmap]
rs13152161	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1347703	0.87[CEU][hapmap]
rs1437836	0.83[CEU][hapmap]
rs1437843	0.82[MEX][hapmap];0.84[TSI][hapmap]
rs1437844	0.84[TSI][hapmap]
rs1437845	0.81[TSI][hapmap]
rs1437848	1.00[CHB][hapmap]
rs1455120	0.95[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1455129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap]
rs1551447	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs1658515	0.83[CEU][hapmap]
rs17058691	0.95[CEU][hapmap]
rs17235632	0.83[CEU][hapmap]
rs2196669	0.95[CEU][hapmap]
rs2332544	0.83[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs4695893	0.82[CEU][hapmap]
rs6553639	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6553640	0.87[CEU][hapmap]
rs6833340	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7664781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs7668989	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs7671314	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs7691283	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7692814	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7693019	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs837189	0.83[CEU][hapmap]
rs9996298	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1378312	C4orf27	cis	parietal	SCAN
rs1378312	SAP30	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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