Variant report

Variant	rs11729518
Chromosome Location	chr4:173646299-173646300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10014796	0.94[EUR][1000 genomes]
rs10016257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs10029955	1.00[ASN][1000 genomes]
rs10031202	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs10213357	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10222748	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1074144	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11132960	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11730738	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11735233	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11736072	1.00[CHB][hapmap]
rs13104048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13134091	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138074	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs13152161	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1347703	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1370576	0.86[CEU][hapmap]
rs1370577	0.86[CEU][hapmap]
rs1437836	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1437843	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1437844	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1437845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1437854	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1437855	0.85[YRI][hapmap]
rs1437856	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1455120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1540473	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1540474	0.86[CEU][hapmap]
rs1540475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1540476	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1540478	0.86[CEU][hapmap]
rs1561305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs1561306	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1561307	0.86[CEU][hapmap]
rs1595413	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17052104	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17058691	1.00[CHB][hapmap]
rs1821862	0.86[CEU][hapmap]
rs1837132	0.94[EUR][1000 genomes]
rs2043780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2083136	0.86[CEU][hapmap]
rs2118443	0.82[CEU][hapmap]
rs2196669	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2332549	1.00[CHB][hapmap]
rs2332550	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs28552483	0.94[EUR][1000 genomes]
rs28579160	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28727534	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28767047	0.94[EUR][1000 genomes]
rs34364219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35170073	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4100737	0.86[CEU][hapmap]
rs4315754	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs4396969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs4414931	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4423855	0.82[CEU][hapmap]
rs4431209	1.00[CHB][hapmap]
rs4572851	0.86[CEU][hapmap]
rs6553640	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6553647	0.86[CEU][hapmap]
rs6553648	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67168311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822057	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6830773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6841156	0.86[CEU][hapmap]
rs6853969	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs716646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs716647	0.86[CEU][hapmap]
rs73869602	0.82[ASN][1000 genomes]
rs7669486	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673000	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7674050	0.86[CEU][hapmap]
rs7677835	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312528	0.86[CEU][hapmap]
rs9992901	1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs9995075	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173645200-173649600	Enhancers	Fetal Intestine Small	intestine
2	chr4:173645400-173646400	Enhancers	A549	lung
3	chr4:173645600-173647000	Enhancers	Fetal Intestine Large	intestine
4	chr4:173646000-173646400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr4:173646000-173647000	Enhancers	HepG2	liver
6	chr4:173646200-173646400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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