Variant report

Variant	rs10222748
Chromosome Location	chr4:173655297-173655298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10014796	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016257	0.87[CEU][hapmap]
rs10050292	0.86[CEU][hapmap]
rs10213357	0.96[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132960	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729518	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11734921	0.80[CEU][hapmap]
rs11735233	0.83[CEU][hapmap]
rs13104048	0.84[CEU][hapmap]
rs13134091	0.95[EUR][1000 genomes]
rs1370576	0.96[CEU][hapmap]
rs1370577	0.96[CEU][hapmap]
rs1437845	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1437854	0.82[CEU][hapmap]
rs1437856	0.87[CEU][hapmap]
rs1540473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540474	0.96[CEU][hapmap]
rs1540475	0.89[CEU][hapmap]
rs1540476	0.85[CEU][hapmap]
rs1540478	0.96[CEU][hapmap]
rs1561305	0.86[CEU][hapmap]
rs1561306	0.86[CEU][hapmap]
rs1561307	0.96[CEU][hapmap]
rs1595413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821862	0.96[CEU][hapmap]
rs1837132	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043780	0.83[CEU][hapmap]
rs2083136	0.96[CEU][hapmap]
rs2118443	0.96[CEU][hapmap]
rs28552483	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579160	0.95[EUR][1000 genomes]
rs28727534	0.95[EUR][1000 genomes]
rs28767047	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364219	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35170073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4100737	0.96[CEU][hapmap]
rs4315754	0.90[CEU][hapmap]
rs4396969	0.87[CEU][hapmap]
rs4414931	0.86[CEU][hapmap]
rs4423855	0.92[CEU][hapmap]
rs4572851	0.96[CEU][hapmap]
rs6553647	0.96[CEU][hapmap]
rs6553648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168311	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6822057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6830773	0.83[CEU][hapmap]
rs6841156	0.96[CEU][hapmap]
rs6853969	0.93[EUR][1000 genomes]
rs716645	0.91[CEU][hapmap]
rs716646	0.87[CEU][hapmap]
rs716647	0.96[CEU][hapmap]
rs7669486	0.89[EUR][1000 genomes]
rs7674050	0.96[CEU][hapmap]
rs7677835	0.84[EUR][1000 genomes]
rs9312528	0.96[CEU][hapmap]
rs9992901	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995075	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173653200-173657400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:173654400-173656200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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