Variant report

Variant	rs11734921
Chromosome Location	chr4:173625844-173625845
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10012267	1.00[JPT][hapmap]
rs10014796	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10022095	1.00[JPT][hapmap]
rs10025284	1.00[JPT][hapmap]
rs10029310	1.00[JPT][hapmap]
rs10029955	0.87[EUR][1000 genomes]
rs10031191	1.00[JPT][hapmap]
rs10031202	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10033472	1.00[JPT][hapmap]
rs10213357	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10222748	0.80[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10520238	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1074144	0.89[EUR][1000 genomes]
rs1097574	1.00[JPT][hapmap]
rs11132960	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11730738	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs12108242	1.00[JPT][hapmap]
rs12512892	1.00[JPT][hapmap]
rs12645987	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13152161	0.81[EUR][1000 genomes]
rs1347703	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs1370572	0.95[CEU][hapmap]
rs1370576	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1370577	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1437836	0.90[CEU][hapmap]
rs1437843	0.86[EUR][1000 genomes]
rs1437844	0.89[EUR][1000 genomes]
rs1455119	1.00[JPT][hapmap]
rs1455120	0.83[EUR][1000 genomes]
rs1540473	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1540474	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1540478	0.80[CEU][hapmap]
rs1561307	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595413	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1658515	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17058762	1.00[JPT][hapmap]
rs17058765	1.00[JPT][hapmap]
rs17058894	1.00[JPT][hapmap]
rs17058922	1.00[JPT][hapmap]
rs17235632	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1821862	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1837132	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1870436	1.00[JPT][hapmap]
rs2083136	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2118443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2164822	1.00[JPT][hapmap]
rs2164823	1.00[JPT][hapmap]
rs2164824	1.00[JPT][hapmap]
rs2164826	1.00[JPT][hapmap]
rs2196669	0.84[EUR][1000 genomes]
rs2332544	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28552483	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28767047	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35170073	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35345571	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4100737	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4423855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4572851	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4695893	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6553640	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6553647	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6553648	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6811397	1.00[JPT][hapmap]
rs6822057	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6826006	1.00[JPT][hapmap]
rs6839897	1.00[JPT][hapmap]
rs6841156	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6844959	1.00[JPT][hapmap]
rs6848466	1.00[JPT][hapmap]
rs716647	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7668989	0.84[EUR][1000 genomes]
rs7673000	0.90[EUR][1000 genomes]
rs7674050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7686162	1.00[JPT][hapmap]
rs7694956	1.00[JPT][hapmap]
rs7699455	1.00[JPT][hapmap]
rs837189	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs837213	1.00[JPT][hapmap]
rs9312528	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9312533	1.00[JPT][hapmap]
rs9884494	1.00[JPT][hapmap]
rs9884518	1.00[JPT][hapmap]
rs9992243	1.00[JPT][hapmap]
rs9992901	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9993208	1.00[JPT][hapmap]
rs9994145	1.00[JPT][hapmap]
rs9995075	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9996298	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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