Variant report

Variant	rs35345571
Chromosome Location	chr4:173525334-173525335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10000607	0.87[EUR][1000 genomes]
rs10012267	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10022095	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10025284	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10029310	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10031191	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10034894	0.87[EUR][1000 genomes]
rs10213357	1.00[JPT][hapmap]
rs10520238	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1097574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11132960	1.00[JPT][hapmap]
rs11734921	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12108242	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12512892	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12645987	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1370576	1.00[JPT][hapmap]
rs1370577	1.00[JPT][hapmap]
rs1455119	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1540474	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs1561307	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1658515	1.00[JPT][hapmap]
rs17058675	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058762	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17058765	1.00[JPT][hapmap]
rs17058894	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17235632	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1821862	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2083136	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2118443	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2164822	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2164823	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs2164824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs2164826	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes]
rs2332544	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4100737	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4423855	1.00[JPT][hapmap]
rs4572851	1.00[JPT][hapmap]
rs4695893	0.82[CHB][hapmap]
rs6553647	1.00[JPT][hapmap]
rs6811397	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6826006	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6839897	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6841156	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6844959	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6848466	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs716647	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7674050	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7676761	0.84[ASN][1000 genomes]
rs7686162	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7694956	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7699455	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs837189	1.00[JPT][hapmap]
rs837209	1.00[CEU][hapmap]
rs837213	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9312528	1.00[JPT][hapmap]
rs9312533	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9992243	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs9993208	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs9994145	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9995075	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173522600-173527000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:173523800-173527200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:173524000-173526800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:173524400-173526200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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