Variant report
| Variant | rs17058675 |
|---|---|
| Chromosome Location | chr4:173537412-173537413 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10000607 | 1.00[EUR][1000 genomes] |
| rs10012267 | 0.87[EUR][1000 genomes] |
| rs10034894 | 1.00[EUR][1000 genomes] |
| rs10520238 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12108242 | 0.87[EUR][1000 genomes] |
| rs12108422 | 0.87[EUR][1000 genomes] |
| rs1455119 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17235632 | 0.85[ASN][1000 genomes] |
| rs2164822 | 1.00[EUR][1000 genomes] |
| rs2164823 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2164824 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2164826 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28459425 | 0.87[EUR][1000 genomes] |
| rs28484578 | 0.87[EUR][1000 genomes] |
| rs28490202 | 0.87[EUR][1000 genomes] |
| rs28529352 | 0.87[EUR][1000 genomes] |
| rs28621838 | 0.87[EUR][1000 genomes] |
| rs28681326 | 0.87[EUR][1000 genomes] |
| rs35345571 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6839897 | 1.00[EUR][1000 genomes] |
| rs6843452 | 0.87[EUR][1000 genomes] |
| rs6844959 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7676761 | 0.84[ASN][1000 genomes] |
| rs7686162 | 0.87[EUR][1000 genomes] |
| rs7694652 | 0.87[EUR][1000 genomes] |
| rs7694956 | 0.87[EUR][1000 genomes] |
| rs7696720 | 0.87[EUR][1000 genomes] |
| rs7699455 | 0.87[EUR][1000 genomes] |
| rs837209 | 0.87[EUR][1000 genomes] |
| rs837213 | 0.87[EUR][1000 genomes] |
| rs9992243 | 1.00[EUR][1000 genomes] |
| rs9992743 | 0.87[EUR][1000 genomes] |
| rs9993208 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031592 | chr4:173112542-173662991 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537359 | chr4:173112542-173662991 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534293 | chr4:173121379-173606082 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv948856 | chr4:173388217-173967546 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv949126 | chr4:173466221-174051451 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:173537200-173537600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
