Variant report

Variant	rs9884494
Chromosome Location	chr4:173750542-173750543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000607	0.80[AMR][1000 genomes]
rs10012267	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10022095	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10025284	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10029310	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10031191	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10033472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10213357	1.00[JPT][hapmap]
rs11132960	1.00[JPT][hapmap]
rs11734921	1.00[JPT][hapmap]
rs12108242	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12512892	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12645987	1.00[JPT][hapmap]
rs1370576	1.00[JPT][hapmap]
rs1370577	1.00[JPT][hapmap]
rs1455119	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1540474	1.00[JPT][hapmap]
rs1561307	1.00[JPT][hapmap]
rs17058762	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17058765	1.00[JPT][hapmap]
rs17058894	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17058922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17058946	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17058951	0.82[CHB][hapmap]
rs1821862	1.00[JPT][hapmap]
rs1870436	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2009141	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2083136	1.00[JPT][hapmap]
rs2118443	1.00[JPT][hapmap]
rs2164822	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2164823	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2164824	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2164826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs28479395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28484578	0.85[AFR][1000 genomes]
rs28637185	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28681326	0.85[AFR][1000 genomes]
rs4100737	1.00[JPT][hapmap]
rs4423855	1.00[JPT][hapmap]
rs4572851	1.00[JPT][hapmap]
rs6553647	1.00[JPT][hapmap]
rs6811397	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6826006	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6827725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6839897	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6841156	1.00[JPT][hapmap]
rs6844959	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6848466	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs716647	1.00[JPT][hapmap]
rs7671554	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7674050	1.00[JPT][hapmap]
rs7686162	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7694956	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7699455	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs837209	1.00[CEU][hapmap]
rs837213	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9312528	1.00[JPT][hapmap]
rs9312533	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9884518	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9992243	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9993208	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs9994145	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9995075	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173747600-173765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:173748800-173751800	Weak transcription	Hela-S3	cervix
3	chr4:173750400-173750600	Enhancers	Fetal Kidney	kidney
4	chr4:173750400-173751000	Enhancers	A549	lung
5	chr4:173750400-173755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links