Variant report

Variant	rs2009141
Chromosome Location	chr4:173756533-173756534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173750700..173753059-chr4:173755917..173757526,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10012267	1.00[CEU][hapmap]
rs10017105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10022095	1.00[CEU][hapmap]
rs10025284	1.00[CEU][hapmap]
rs10029310	1.00[CEU][hapmap]
rs10031191	1.00[CEU][hapmap]
rs10033472	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11930252	0.94[MEX][hapmap]
rs11934540	0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs12108242	1.00[CEU][hapmap]
rs12512892	1.00[CEU][hapmap]
rs1455119	1.00[CEU][hapmap]
rs17058762	1.00[CEU][hapmap]
rs17058894	1.00[CEU][hapmap]
rs17058922	1.00[CEU][hapmap]
rs17058946	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058951	1.00[CHB][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1870436	1.00[CEU][hapmap]
rs2164822	1.00[CEU][hapmap]
rs2164823	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2164824	1.00[CEU][hapmap]
rs2164826	1.00[CEU][hapmap]
rs60948756	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6811397	1.00[CEU][hapmap]
rs6826006	1.00[CEU][hapmap]
rs6827725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6839897	1.00[CEU][hapmap]
rs6844959	1.00[CEU][hapmap]
rs6848466	1.00[CEU][hapmap]
rs73000128	0.82[AMR][1000 genomes]
rs7671554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7686162	1.00[CEU][hapmap]
rs7694956	1.00[CEU][hapmap]
rs7699455	1.00[CEU][hapmap]
rs837209	1.00[CEU][hapmap]
rs837213	1.00[CEU][hapmap]
rs9312533	1.00[CEU][hapmap]
rs9884494	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs9884518	1.00[CEU][hapmap]
rs9992243	1.00[CEU][hapmap]
rs9993208	1.00[CEU][hapmap]
rs9993772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9994145	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv968039	chr4:173753530-173772714	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2009141	ZNF324	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173747600-173765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:173755800-173759200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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