Variant report

Variant	rs28579160
Chromosome Location	chr4:173672659-173672660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10014796	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10029955	1.00[ASN][1000 genomes]
rs10031202	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213357	0.94[EUR][1000 genomes]
rs10222748	0.95[EUR][1000 genomes]
rs1074144	1.00[ASN][1000 genomes]
rs11132960	0.94[EUR][1000 genomes]
rs11729518	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730738	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13134091	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152161	1.00[ASN][1000 genomes]
rs1347703	0.84[ASN][1000 genomes]
rs1437843	1.00[ASN][1000 genomes]
rs1437844	1.00[ASN][1000 genomes]
rs1437845	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1455120	1.00[ASN][1000 genomes]
rs1540473	0.94[EUR][1000 genomes]
rs1595413	0.94[EUR][1000 genomes]
rs1837132	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2196669	1.00[ASN][1000 genomes]
rs28552483	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28727534	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28767047	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34364219	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35170073	0.95[EUR][1000 genomes]
rs6553640	1.00[ASN][1000 genomes]
rs6553648	0.94[EUR][1000 genomes]
rs67168311	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822057	0.94[EUR][1000 genomes]
rs6853969	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869602	0.82[ASN][1000 genomes]
rs7669486	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673000	1.00[ASN][1000 genomes]
rs7677835	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992901	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173668800-173672800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:173671800-173673000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:173672000-173673000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:173672000-173673200	Enhancers	GM12878-XiMat	blood
5	chr4:173672200-173672800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:173672400-173673000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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