Variant report

Variant	rs7668615
Chromosome Location	chr4:173640564-173640565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10000667	1.00[CEU][hapmap]
rs10015086	1.00[CEU][hapmap]
rs10025132	1.00[CEU][hapmap]
rs10028462	1.00[CEU][hapmap]
rs10029692	1.00[CEU][hapmap]
rs10033192	1.00[CEU][hapmap]
rs1072806	1.00[CEU][hapmap]
rs11730738	1.00[JPT][hapmap]
rs11932974	0.81[YRI][hapmap]
rs1455127	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17058962	1.00[CEU][hapmap]
rs2169008	1.00[CEU][hapmap]
rs337979	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs338036	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6819906	1.00[CEU][hapmap]
rs6820453	1.00[CEU][hapmap]
rs6824098	1.00[CEU][hapmap]
rs6849432	1.00[CEU][hapmap]
rs72990404	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998107	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673087	1.00[CEU][hapmap]
rs7675865	1.00[CEU][hapmap]
rs7676418	1.00[CEU][hapmap]
rs7683785	1.00[CEU][hapmap]
rs7692288	1.00[CEU][hapmap]
rs7694721	1.00[CEU][hapmap]
rs877857	1.00[CEU][hapmap]
rs9993592	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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