Variant report

Variant	rs17058962
Chromosome Location	chr4:173763772-173763773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10015086	1.00[CEU][hapmap]
rs10029692	1.00[CEU][hapmap]
rs2169008	1.00[CEU][hapmap]
rs56750457	1.00[EUR][1000 genomes]
rs58238195	1.00[EUR][1000 genomes]
rs58250917	1.00[EUR][1000 genomes]
rs58422707	1.00[EUR][1000 genomes]
rs58487711	1.00[EUR][1000 genomes]
rs61424387	1.00[EUR][1000 genomes]
rs6820453	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72998188	1.00[EUR][1000 genomes]
rs72998193	1.00[EUR][1000 genomes]
rs73000116	1.00[EUR][1000 genomes]
rs73000131	1.00[EUR][1000 genomes]
rs73000162	1.00[EUR][1000 genomes]
rs73002072	1.00[AMR][1000 genomes]
rs73002075	1.00[AMR][1000 genomes]
rs73870304	1.00[EUR][1000 genomes]
rs7668615	1.00[CEU][hapmap]
rs7671315	1.00[EUR][1000 genomes]
rs7676418	1.00[CEU][hapmap]
rs7683785	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv968039	chr4:173753530-173772714	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173747600-173765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:173759400-173764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:173762200-173771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:173763000-173764000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:173763400-173763800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:173763600-173764600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:173763600-173765000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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