Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10015086	1.00[CEU][hapmap]
rs10029692	1.00[CEU][hapmap]
rs17058962	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2169008	1.00[CEU][hapmap]
rs56750457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58238195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58250917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58422707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58487711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61424387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998195	0.92[AFR][1000 genomes]
rs73000116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73000131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73000162	1.00[EUR][1000 genomes]
rs73870304	1.00[EUR][1000 genomes]
rs7668615	1.00[CEU][hapmap]
rs7671315	1.00[EUR][1000 genomes]
rs7676418	1.00[CEU][hapmap]
rs7683785	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173715000-173740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173731400-173747400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:173734200-173736400	Enhancers	Fetal Intestine Large	intestine
4	chr4:173734400-173736600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:173735000-173736000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:173735000-173736000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:173735600-173736400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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