Variant report

Variant	rs9993592
Chromosome Location	chr4:173471666-173471667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10000667	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10004974	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025132	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10028462	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030296	1.00[CEU][hapmap]
rs10033192	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1072806	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11132939	1.00[EUR][1000 genomes]
rs12108601	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1455127	1.00[CEU][hapmap]
rs1484021	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs163075	1.00[EUR][1000 genomes]
rs1848396	1.00[CEU][hapmap]
rs1848398	1.00[CEU][hapmap]
rs1869684	0.84[YRI][hapmap]
rs234125	1.00[EUR][1000 genomes]
rs28578805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28601872	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs335967	1.00[CEU][hapmap]
rs335988	1.00[CEU][hapmap]
rs335994	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs337044	1.00[CEU][hapmap]
rs337979	1.00[CEU][hapmap]
rs338036	1.00[CEU][hapmap]
rs4453902	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4692918	1.00[CEU][hapmap]
rs662762	1.00[CEU][hapmap]
rs6816514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818039	1.00[EUR][1000 genomes]
rs6818604	1.00[EUR][1000 genomes]
rs6819906	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6824098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6824530	1.00[EUR][1000 genomes]
rs6835263	1.00[EUR][1000 genomes]
rs6846178	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6849432	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6852958	1.00[EUR][1000 genomes]
rs6856936	1.00[CEU][hapmap]
rs72986650	1.00[EUR][1000 genomes]
rs72988232	1.00[EUR][1000 genomes]
rs72988242	1.00[EUR][1000 genomes]
rs72988264	1.00[EUR][1000 genomes]
rs72995053	1.00[EUR][1000 genomes]
rs72995055	1.00[EUR][1000 genomes]
rs72995071	1.00[EUR][1000 genomes]
rs72997054	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7668615	1.00[CEU][hapmap]
rs7670726	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7673087	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675865	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7686531	1.00[CEU][hapmap]
rs7688719	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7690422	1.00[EUR][1000 genomes]
rs7692288	1.00[CEU][hapmap]
rs7694721	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs877857	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs961306	0.84[YRI][hapmap]
rs988129	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173468800-173472400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:173469600-173478000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:173469800-173472200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:173470600-173471800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:173470600-173472200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:173470600-173476400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:173470600-173477200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:173471400-173476400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:173471600-173477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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