Variant report

Variant	rs1455127
Chromosome Location	chr4:173534608-173534609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10000667	1.00[CEU][hapmap]
rs10025132	1.00[CEU][hapmap]
rs10028462	1.00[CEU][hapmap]
rs10030296	1.00[CEU][hapmap]
rs10033192	1.00[CEU][hapmap]
rs1072806	1.00[CEU][hapmap]
rs12108601	1.00[CEU][hapmap]
rs335967	1.00[CEU][hapmap]
rs335988	1.00[CEU][hapmap]
rs337044	1.00[CEU][hapmap]
rs337979	1.00[CEU][hapmap]
rs338036	1.00[CEU][hapmap]
rs662762	1.00[CEU][hapmap]
rs6819906	1.00[CEU][hapmap]
rs6824098	1.00[CEU][hapmap]
rs6849432	1.00[CEU][hapmap]
rs72990404	0.89[ASN][1000 genomes]
rs72998107	0.89[ASN][1000 genomes]
rs7668615	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7673087	1.00[CEU][hapmap]
rs7675865	1.00[CEU][hapmap]
rs7692288	1.00[CEU][hapmap]
rs7694721	1.00[CEU][hapmap]
rs877857	1.00[CEU][hapmap]
rs9993592	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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