Variant report

Variant	rs28601872
Chromosome Location	chr4:173478125-173478126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10000667	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10004974	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10024704	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10025132	1.00[EUR][1000 genomes]
rs10028462	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10033192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1072806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11132939	1.00[EUR][1000 genomes]
rs12108601	1.00[EUR][1000 genomes]
rs1484021	1.00[EUR][1000 genomes]
rs163075	1.00[EUR][1000 genomes]
rs234125	1.00[EUR][1000 genomes]
rs28578805	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs335994	1.00[EUR][1000 genomes]
rs4453902	1.00[EUR][1000 genomes]
rs6816514	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6818039	1.00[EUR][1000 genomes]
rs6818604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6819906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6824098	1.00[EUR][1000 genomes]
rs6835263	1.00[EUR][1000 genomes]
rs6846178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849432	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6852958	1.00[EUR][1000 genomes]
rs72986650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988232	1.00[EUR][1000 genomes]
rs72988242	1.00[EUR][1000 genomes]
rs72988264	1.00[EUR][1000 genomes]
rs72995053	1.00[EUR][1000 genomes]
rs72995055	1.00[EUR][1000 genomes]
rs72995071	1.00[EUR][1000 genomes]
rs72997054	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7670726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673087	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7675865	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7688719	1.00[EUR][1000 genomes]
rs7690422	1.00[EUR][1000 genomes]
rs7694721	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs877857	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs877858	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9993592	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173476400-173478400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:173476400-173478400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:173477200-173478200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:173477800-173478200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:173478000-173478400	Enhancers	H9 Cell Line	embryonic stem cell

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