Variant report

Variant	rs335994
Chromosome Location	chr4:173321904-173321905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10000667	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10004974	1.00[EUR][1000 genomes]
rs10012421	1.00[CEU][hapmap]
rs10024704	1.00[EUR][1000 genomes]
rs10025132	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10028462	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10030296	1.00[CEU][hapmap]
rs10033192	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1072806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11132939	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12108601	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1396221	1.00[ASW][hapmap];0.81[LWK][hapmap];0.96[MKK][hapmap];0.85[YRI][hapmap]
rs1484021	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs163075	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17058114	1.00[CEU][hapmap]
rs17058116	1.00[CEU][hapmap]
rs1848396	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1848398	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs234125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28578805	1.00[EUR][1000 genomes]
rs28601872	1.00[EUR][1000 genomes]
rs335967	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.81[YRI][hapmap]
rs335988	1.00[CEU][hapmap]
rs337044	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs337979	1.00[CEU][hapmap]
rs338036	1.00[CEU][hapmap]
rs4453902	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4692918	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs662762	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs6816514	1.00[EUR][1000 genomes]
rs6818039	1.00[EUR][1000 genomes]
rs6818604	1.00[EUR][1000 genomes]
rs6819906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6824098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6824530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6835263	1.00[EUR][1000 genomes]
rs6846178	1.00[EUR][1000 genomes]
rs6849432	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6852958	1.00[EUR][1000 genomes]
rs6856936	1.00[CEU][hapmap]
rs72984395	1.00[EUR][1000 genomes]
rs72986322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72986325	1.00[EUR][1000 genomes]
rs72986326	1.00[EUR][1000 genomes]
rs72986650	1.00[EUR][1000 genomes]
rs72988232	1.00[EUR][1000 genomes]
rs72988242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988264	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995053	1.00[EUR][1000 genomes]
rs72995055	1.00[EUR][1000 genomes]
rs72995071	1.00[EUR][1000 genomes]
rs72997054	1.00[EUR][1000 genomes]
rs7670726	1.00[EUR][1000 genomes]
rs7673087	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7675865	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7686531	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap]
rs7688719	0.84[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[EUR][1000 genomes]
rs7690422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7692288	1.00[CEU][hapmap]
rs7694721	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs877857	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs877858	1.00[EUR][1000 genomes]
rs988129	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs9993592	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs335994	FAM153A	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173321800-173322000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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