Variant report
| Variant | rs72984395 |
|---|---|
| Chromosome Location | chr4:173243466-173243467 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11132939 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12108601 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1484021 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs163075 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs234125 | 1.00[EUR][1000 genomes] |
| rs28602395 | 1.00[EUR][1000 genomes] |
| rs335994 | 1.00[EUR][1000 genomes] |
| rs4453902 | 1.00[EUR][1000 genomes] |
| rs6824530 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6835263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6851334 | 1.00[EUR][1000 genomes] |
| rs72986322 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72986325 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72986326 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72988232 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72988242 | 1.00[EUR][1000 genomes] |
| rs72988257 | 0.81[AFR][1000 genomes] |
| rs72988264 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72995053 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72995055 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72995071 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7666355 | 1.00[EUR][1000 genomes] |
| rs7688719 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7690422 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031592 | chr4:173112542-173662991 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537359 | chr4:173112542-173662991 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534293 | chr4:173121379-173606082 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025193 | chr4:173145426-173267314 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv537360 | chr4:173145426-173267314 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:173241200-173244000 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
