Variant report

Variant	rs28602395
Chromosome Location	chr4:173092000-173092001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173074282..173077091-chr4:173091683..173093762,2	K562	blood:
2	chr4:173067690..173070297-chr4:173091111..173092982,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10022218	0.83[AFR][1000 genomes]
rs10024530	0.83[AFR][1000 genomes]
rs10033775	1.00[EUR][1000 genomes]
rs1027760	1.00[EUR][1000 genomes]
rs1394855	1.00[EUR][1000 genomes]
rs1505481	1.00[EUR][1000 genomes]
rs1505493	1.00[EUR][1000 genomes]
rs184564	1.00[EUR][1000 genomes]
rs332991	1.00[EUR][1000 genomes]
rs59689241	1.00[EUR][1000 genomes]
rs60635348	1.00[EUR][1000 genomes]
rs6553606	1.00[EUR][1000 genomes]
rs6553613	0.85[AFR][1000 genomes]
rs6824530	1.00[EUR][1000 genomes]
rs6843195	0.88[AFR][1000 genomes]
rs6851334	1.00[EUR][1000 genomes]
rs72700976	0.89[AFR][1000 genomes]
rs72700992	0.83[AFR][1000 genomes]
rs72700993	0.83[AFR][1000 genomes]
rs72984395	1.00[EUR][1000 genomes]
rs72986322	1.00[EUR][1000 genomes]
rs72986325	1.00[EUR][1000 genomes]
rs72986326	1.00[EUR][1000 genomes]
rs72993076	1.00[EUR][1000 genomes]
rs73870120	1.00[EUR][1000 genomes]
rs73870121	1.00[EUR][1000 genomes]
rs7657360	1.00[EUR][1000 genomes]
rs7658535	1.00[EUR][1000 genomes]
rs7658765	1.00[EUR][1000 genomes]
rs7659496	1.00[EUR][1000 genomes]
rs7661465	0.89[AFR][1000 genomes]
rs7666355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7667747	1.00[EUR][1000 genomes]
rs7669963	0.83[AFR][1000 genomes]
rs7682225	1.00[EUR][1000 genomes]
rs7682833	1.00[EUR][1000 genomes]
rs7684124	1.00[EUR][1000 genomes]
rs7687749	1.00[EUR][1000 genomes]
rs7688928	1.00[EUR][1000 genomes]
rs995983	1.00[EUR][1000 genomes]
rs9991231	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1019896	chr4:173080612-173136826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173089800-173094000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:173091400-173092800	Weak transcription	K562	blood
3	chr4:173091400-173093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:173091400-173094000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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