Variant report

Variant	rs6553613
Chromosome Location	chr4:173094233-173094234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173089178..173091418-chr4:173092535..173094770,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10012421	0.86[ASW][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs10013162	0.95[YRI][hapmap]
rs10022218	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024530	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17058107	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17058111	1.00[YRI][hapmap]
rs17058114	1.00[YRI][hapmap]
rs17058116	1.00[YRI][hapmap]
rs2131002	1.00[GIH][hapmap]
rs28602395	0.85[AFR][1000 genomes]
rs28691079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693865	0.84[EUR][1000 genomes]
rs6837124	1.00[CEU][hapmap]
rs6843195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850694	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs72700930	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700931	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700933	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700934	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700935	1.00[ASN][1000 genomes]
rs72700936	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700938	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700941	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700953	0.84[EUR][1000 genomes]
rs72700955	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700956	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700958	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700963	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700968	1.00[ASN][1000 genomes]
rs72700976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700992	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700993	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661465	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666355	0.85[AFR][1000 genomes]
rs7669963	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684208	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9991231	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1019896	chr4:173080612-173136826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173092800-173094600	Enhancers	K562	blood
2	chr4:173093600-173094600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:173094000-173094600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:173094000-173094600	Enhancers	HUES6 Cell Line	embryonic stem cell

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