Variant report

Variant	rs55693865
Chromosome Location	chr4:173064165-173064166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173046006..173047679-chr4:173063053..173065113,2	K562	blood:
2	chr4:173054623..173059133-chr4:173061715..173065707,6	K562	blood:
3	chr4:173049353..173051356-chr4:173063889..173066410,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10022218	0.84[EUR][1000 genomes]
rs10024530	0.84[EUR][1000 genomes]
rs10780086	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17222718	1.00[ASN][1000 genomes]
rs28691079	0.84[EUR][1000 genomes]
rs56384225	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6553613	0.84[EUR][1000 genomes]
rs67840347	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843195	0.84[EUR][1000 genomes]
rs72698967	1.00[AMR][1000 genomes]
rs72698968	1.00[AMR][1000 genomes]
rs72698971	1.00[AMR][1000 genomes]
rs72698973	1.00[AMR][1000 genomes]
rs72698977	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72698979	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72698980	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72698983	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72698985	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72700910	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700968	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72700976	0.84[EUR][1000 genomes]
rs72700992	0.84[EUR][1000 genomes]
rs72700993	0.84[EUR][1000 genomes]
rs7661465	0.84[EUR][1000 genomes]
rs7669963	0.84[EUR][1000 genomes]
rs7688137	1.00[ASN][1000 genomes]
rs9991231	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830152	chr4:172906364-173087067	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173061800-173066000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:173062200-173064600	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:173062800-173064600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:173063000-173064800	Enhancers	NH-A	brain
5	chr4:173063000-173065200	Enhancers	K562	blood
6	chr4:173063400-173064200	Enhancers	Osteobl	bone
7	chr4:173063400-173065000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:173063400-173065400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:173063600-173064800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:173063800-173064200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:173063800-173064400	Enhancers	NHDF-Ad	bronchial
12	chr4:173064000-173064200	Flanking Active TSS	A549	lung
13	chr4:173064000-173068200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links