Variant report

Variant	rs72698967
Chromosome Location	chr4:172984458-172984459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs55693865	1.00[AMR][1000 genomes]
rs56179190	0.96[EUR][1000 genomes]
rs56384225	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67840347	0.82[EUR][1000 genomes]
rs68068922	0.96[EUR][1000 genomes]
rs72698968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72698971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72698973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72698977	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72698979	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72698980	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72698983	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72698985	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72700910	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72700930	1.00[AMR][1000 genomes]
rs72700931	1.00[AMR][1000 genomes]
rs72700933	1.00[AMR][1000 genomes]
rs72700934	1.00[AMR][1000 genomes]
rs72700936	1.00[AMR][1000 genomes]
rs72700937	1.00[AMR][1000 genomes]
rs72700938	1.00[AMR][1000 genomes]
rs72700941	1.00[AMR][1000 genomes]
rs72700946	1.00[AMR][1000 genomes]
rs72700953	1.00[AMR][1000 genomes]
rs72700955	1.00[AMR][1000 genomes]
rs72700956	1.00[AMR][1000 genomes]
rs72700958	1.00[AMR][1000 genomes]
rs72700963	1.00[AMR][1000 genomes]
rs72700968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830152	chr4:172906364-173087067	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv596198	chr4:172914759-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv596199	chr4:172922257-173035260	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv596200	chr4:172932137-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv881219	chr4:172946287-173024088	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv4605	chr4:172965232-173013447	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv437950	chr4:172973580-172990972	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv1021388	chr4:172975682-172989493	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv1017091	chr4:172975682-172989521	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv1805137	chr4:172981543-172992435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1799581	chr4:172981543-172992876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172984000-172985400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:172984000-172985800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:172984200-172985200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:172984200-172985400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:172984400-172985400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links