Variant report
| Variant | rs72700935 |
|---|---|
| Chromosome Location | chr4:173049249-173049250 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:173048642..173050883-chr4:173054945..173057723,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10022218 | 1.00[ASN][1000 genomes] |
| rs10024530 | 1.00[ASN][1000 genomes] |
| rs28691079 | 1.00[ASN][1000 genomes] |
| rs6553613 | 1.00[ASN][1000 genomes] |
| rs6843195 | 1.00[ASN][1000 genomes] |
| rs72700930 | 1.00[ASN][1000 genomes] |
| rs72700931 | 1.00[ASN][1000 genomes] |
| rs72700933 | 1.00[ASN][1000 genomes] |
| rs72700934 | 1.00[ASN][1000 genomes] |
| rs72700936 | 1.00[ASN][1000 genomes] |
| rs72700937 | 1.00[ASN][1000 genomes] |
| rs72700938 | 1.00[ASN][1000 genomes] |
| rs72700941 | 1.00[ASN][1000 genomes] |
| rs72700946 | 1.00[ASN][1000 genomes] |
| rs72700955 | 1.00[ASN][1000 genomes] |
| rs72700956 | 1.00[ASN][1000 genomes] |
| rs72700958 | 1.00[ASN][1000 genomes] |
| rs72700963 | 1.00[ASN][1000 genomes] |
| rs72700968 | 1.00[ASN][1000 genomes] |
| rs72700976 | 1.00[ASN][1000 genomes] |
| rs72700992 | 1.00[ASN][1000 genomes] |
| rs72700993 | 1.00[ASN][1000 genomes] |
| rs7661465 | 1.00[ASN][1000 genomes] |
| rs7669963 | 1.00[ASN][1000 genomes] |
| rs9991231 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022527 | chr4:172547732-173236939 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537357 | chr4:172547732-173236939 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024693 | chr4:172609237-173236939 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv498033 | chr4:172830955-173121438 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv830152 | chr4:172906364-173087067 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv980436 | chr4:173005588-173060038 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 7 | nsv830153 | chr4:173038006-173211957 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:173043600-173052800 | Weak transcription | K562 | blood |
