Variant report

Variant	rs10013162
Chromosome Location	chr4:173117008-173117009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10012421	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs10022218	0.99[AFR][1000 genomes]
rs10024530	0.99[AFR][1000 genomes]
rs1027760	1.00[EUR][1000 genomes]
rs11132939	1.00[EUR][1000 genomes]
rs11934582	1.00[CEU][hapmap]
rs11936619	1.00[CEU][hapmap]
rs12503270	1.00[CEU][hapmap]
rs12504105	1.00[CEU][hapmap]
rs12504133	1.00[CEU][hapmap]
rs13142431	1.00[CEU][hapmap]
rs1394855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1484021	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505481	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505493	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17057867	1.00[CEU][hapmap]
rs17057954	1.00[CEU][hapmap]
rs17057985	1.00[CEU][hapmap]
rs17057997	1.00[CEU][hapmap]
rs17058026	1.00[CEU][hapmap]
rs17058107	0.95[YRI][hapmap]
rs17058111	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17058114	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17058116	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1848396	1.00[CEU][hapmap]
rs1848398	1.00[CEU][hapmap]
rs28602395	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28691079	0.81[AFR][1000 genomes]
rs4453902	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4692918	1.00[CEU][hapmap]
rs6553606	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6553613	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs6824530	1.00[EUR][1000 genomes]
rs6829575	1.00[CEU][hapmap]
rs6829817	1.00[CEU][hapmap]
rs6843195	0.91[AFR][1000 genomes]
rs6850694	0.95[YRI][hapmap]
rs6851334	1.00[EUR][1000 genomes]
rs6856936	1.00[CEU][hapmap]
rs72700976	0.92[AFR][1000 genomes]
rs72700992	0.99[AFR][1000 genomes]
rs72700993	0.99[AFR][1000 genomes]
rs72984395	1.00[EUR][1000 genomes]
rs72986322	1.00[EUR][1000 genomes]
rs72986325	1.00[EUR][1000 genomes]
rs72986326	1.00[EUR][1000 genomes]
rs72988232	1.00[EUR][1000 genomes]
rs72988242	1.00[EUR][1000 genomes]
rs73870120	1.00[EUR][1000 genomes]
rs73870121	1.00[EUR][1000 genomes]
rs7661465	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs7666355	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7667747	1.00[EUR][1000 genomes]
rs7669963	0.99[AFR][1000 genomes]
rs7682225	1.00[EUR][1000 genomes]
rs7682467	1.00[CEU][hapmap]
rs7682833	1.00[EUR][1000 genomes]
rs7684208	0.95[YRI][hapmap]
rs7686531	1.00[CEU][hapmap]
rs7688719	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7690422	1.00[EUR][1000 genomes]
rs952390	1.00[CEU][hapmap]
rs988129	1.00[CEU][hapmap]
rs995983	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9991231	0.95[YRI][hapmap];0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1019896	chr4:173080612-173136826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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