Variant report

Variant	rs6553606
Chromosome Location	chr4:172986805-172986806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10012421	1.00[CEU][hapmap]
rs10013162	1.00[CEU][hapmap]
rs10033775	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1027760	1.00[EUR][1000 genomes]
rs11934582	1.00[CEU][hapmap]
rs11935809	1.00[CEU][hapmap]
rs11936619	1.00[CEU][hapmap]
rs12503270	1.00[CEU][hapmap]
rs12504105	1.00[CEU][hapmap]
rs12504133	1.00[CEU][hapmap]
rs13142431	1.00[CEU][hapmap]
rs13435873	1.00[CEU][hapmap]
rs1394849	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1394855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505481	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505493	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1566944	1.00[AMR][1000 genomes]
rs1566946	1.00[AMR][1000 genomes]
rs17057568	1.00[CEU][hapmap]
rs17057576	1.00[CEU][hapmap]
rs17057585	1.00[CEU][hapmap]
rs17057867	1.00[CEU][hapmap]
rs17057954	1.00[CEU][hapmap]
rs17057985	1.00[CEU][hapmap]
rs17057997	1.00[CEU][hapmap]
rs17058026	1.00[CEU][hapmap]
rs17058111	1.00[CEU][hapmap]
rs17058114	1.00[CEU][hapmap]
rs17058116	1.00[CEU][hapmap]
rs184564	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2131002	1.00[MEX][hapmap]
rs28602395	1.00[EUR][1000 genomes]
rs332991	1.00[EUR][1000 genomes]
rs420813	1.00[CEU][hapmap]
rs59689241	1.00[EUR][1000 genomes]
rs60635348	1.00[EUR][1000 genomes]
rs6829575	1.00[CEU][hapmap]
rs6829817	1.00[CEU][hapmap]
rs6830980	1.00[MEX][hapmap]
rs6851334	1.00[EUR][1000 genomes]
rs72993076	1.00[EUR][1000 genomes]
rs73870120	1.00[EUR][1000 genomes]
rs73870121	1.00[EUR][1000 genomes]
rs7657360	1.00[EUR][1000 genomes]
rs7658535	1.00[EUR][1000 genomes]
rs7658765	1.00[EUR][1000 genomes]
rs7659496	1.00[EUR][1000 genomes]
rs7664908	1.00[AMR][1000 genomes]
rs7666355	1.00[EUR][1000 genomes]
rs7667747	1.00[EUR][1000 genomes]
rs7682225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7682467	1.00[CEU][hapmap]
rs7682833	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7684124	1.00[EUR][1000 genomes]
rs7687749	1.00[EUR][1000 genomes]
rs7688928	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs952390	1.00[CEU][hapmap]
rs995983	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830152	chr4:172906364-173087067	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv596198	chr4:172914759-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv596199	chr4:172922257-173035260	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv596200	chr4:172932137-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv881219	chr4:172946287-173024088	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv4605	chr4:172965232-173013447	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv437950	chr4:172973580-172990972	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv1021388	chr4:172975682-172989493	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv1017091	chr4:172975682-172989521	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv1805137	chr4:172981543-172992435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1799581	chr4:172981543-172992876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv508332	chr4:172985686-173001771	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1799974	chr4:172985760-172992876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv819440	chr4:172986626-172993430	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3464622	chr4:172986677-172994875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172985400-172989200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:172985800-172989000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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