Variant report

Variant	rs420813
Chromosome Location	chr4:172875485-172875486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10033775	1.00[CEU][hapmap]
rs1027761	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs11934582	1.00[CEU][hapmap]
rs11935809	1.00[CEU][hapmap]
rs11936619	1.00[CEU][hapmap]
rs12503270	1.00[CEU][hapmap]
rs12504105	1.00[CEU][hapmap]
rs12504133	1.00[CEU][hapmap]
rs13142431	1.00[CEU][hapmap]
rs13435873	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394855	1.00[CEU][hapmap]
rs1505481	1.00[CEU][hapmap]
rs1505493	1.00[CEU][hapmap]
rs17057568	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17057576	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17057585	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17057743	1.00[CHB][hapmap]
rs17057767	0.86[CHB][hapmap]
rs17057787	0.86[CHB][hapmap]
rs17057789	0.86[CHB][hapmap]
rs17057792	0.86[CHB][hapmap]
rs17057803	0.85[CHB][hapmap]
rs17057867	1.00[CEU][hapmap]
rs17057954	1.00[CEU][hapmap]
rs17057985	1.00[CEU][hapmap]
rs17057997	1.00[CEU][hapmap]
rs17058026	1.00[CEU][hapmap]
rs184564	1.00[CEU][hapmap]
rs332978	0.82[ASN][1000 genomes]
rs332990	1.00[EUR][1000 genomes]
rs412763	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4146320	0.85[CHB][hapmap]
rs495653	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6553606	1.00[CEU][hapmap]
rs6829575	1.00[CEU][hapmap]
rs6829817	1.00[CEU][hapmap]
rs7682225	1.00[CEU][hapmap]
rs7682467	1.00[CEU][hapmap]
rs7682833	1.00[CEU][hapmap]
rs7688928	1.00[CEU][hapmap]
rs952390	1.00[CEU][hapmap]
rs995983	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv520744	chr4:172797761-172897603	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029351	chr4:172809594-172893072	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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