Variant report

Variant	rs17057576
Chromosome Location	chr4:172855929-172855930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:172853787..172856208-chr4:172863065..172865371,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10033775	1.00[CEU][hapmap]
rs1027761	1.00[TSI][hapmap]
rs11934582	1.00[CEU][hapmap]
rs11935809	1.00[CEU][hapmap]
rs11936619	1.00[CEU][hapmap]
rs12503270	1.00[CEU][hapmap]
rs12504105	1.00[CEU][hapmap]
rs12504133	1.00[CEU][hapmap]
rs13142431	1.00[CEU][hapmap]
rs13435873	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1394855	1.00[CEU][hapmap]
rs1505481	1.00[CEU][hapmap]
rs1505493	1.00[CEU][hapmap]
rs17057568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057585	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057803	1.00[TSI][hapmap]
rs17057867	1.00[CEU][hapmap]
rs17057954	1.00[CEU][hapmap]
rs17057985	1.00[CEU][hapmap]
rs17057997	1.00[CEU][hapmap]
rs17058026	1.00[CEU][hapmap]
rs184564	1.00[CEU][hapmap]
rs332990	1.00[EUR][1000 genomes]
rs368706	1.00[TSI][hapmap]
rs412763	1.00[TSI][hapmap]
rs4146320	1.00[TSI][hapmap]
rs420813	1.00[CEU][hapmap]
rs495653	1.00[EUR][1000 genomes]
rs6553606	1.00[CEU][hapmap]
rs6829575	1.00[CEU][hapmap]
rs6829817	1.00[CEU][hapmap]
rs7682225	1.00[CEU][hapmap]
rs7682467	1.00[CEU][hapmap]
rs7682833	1.00[CEU][hapmap]
rs7688928	1.00[CEU][hapmap]
rs952390	1.00[CEU][hapmap]
rs995983	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv881602	chr4:172772005-172867912	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv596197	chr4:172797761-172868945	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv520744	chr4:172797761-172897603	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029351	chr4:172809594-172893072	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv870367	chr4:172834672-172867495	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1018930	chr4:172836503-172865509	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv519578	chr4:172842419-172858612	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172851600-172859200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:172855000-172858000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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