Variant report

Variant	rs184564
Chromosome Location	chr4:172902011-172902012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10033775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1027760	1.00[EUR][1000 genomes]
rs11934582	1.00[CEU][hapmap]
rs11935809	1.00[CEU][hapmap]
rs11936619	1.00[CEU][hapmap]
rs12503270	1.00[CEU][hapmap]
rs12504105	1.00[CEU][hapmap]
rs12504133	1.00[CEU][hapmap]
rs13142431	1.00[CEU][hapmap]
rs13435873	1.00[CEU][hapmap]
rs1394855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505481	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1505493	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17057568	1.00[CEU][hapmap]
rs17057576	1.00[CEU][hapmap]
rs17057585	1.00[CEU][hapmap]
rs17057867	1.00[CEU][hapmap]
rs17057954	1.00[CEU][hapmap]
rs17057985	1.00[CEU][hapmap]
rs17057997	1.00[CEU][hapmap]
rs17058026	1.00[CEU][hapmap]
rs189145	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28602395	1.00[EUR][1000 genomes]
rs332990	1.00[JPT][hapmap]
rs332991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420813	1.00[CEU][hapmap]
rs59689241	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60635348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6553606	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6829575	1.00[CEU][hapmap]
rs6829817	1.00[CEU][hapmap]
rs6851334	1.00[EUR][1000 genomes]
rs72993076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73870120	1.00[EUR][1000 genomes]
rs73870121	1.00[EUR][1000 genomes]
rs7657360	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7658535	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7658765	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7659496	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7666355	1.00[EUR][1000 genomes]
rs7667747	1.00[EUR][1000 genomes]
rs7675647	0.82[JPT][hapmap]
rs7682225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7682467	1.00[CEU][hapmap]
rs7682833	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7684124	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7687749	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7688928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952390	1.00[CEU][hapmap]
rs995983	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1025388	chr4:172891427-172951140	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172900800-172905000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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