Variant report

Variant	rs72986325
Chromosome Location	chr4:173267277-173267278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10025132	1.00[EUR][1000 genomes]
rs10028462	1.00[EUR][1000 genomes]
rs11132939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12108601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1484021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs163075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs234125	1.00[EUR][1000 genomes]
rs28578805	1.00[EUR][1000 genomes]
rs28602395	1.00[EUR][1000 genomes]
rs335994	1.00[EUR][1000 genomes]
rs4453902	1.00[EUR][1000 genomes]
rs6816514	1.00[EUR][1000 genomes]
rs6818039	1.00[EUR][1000 genomes]
rs6824530	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6835263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849432	1.00[EUR][1000 genomes]
rs6851334	1.00[EUR][1000 genomes]
rs6852958	1.00[EUR][1000 genomes]
rs72984395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72986322	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72986326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988242	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72988257	0.83[AFR][1000 genomes]
rs72988264	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72995053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72997054	1.00[EUR][1000 genomes]
rs7666355	1.00[EUR][1000 genomes]
rs7688719	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690422	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173266200-173269400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links