Variant report

Variant	rs1396221
Chromosome Location	chr4:173279126-173279127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10000667	1.00[EUR][1000 genomes]
rs10004974	1.00[EUR][1000 genomes]
rs10024704	1.00[EUR][1000 genomes]
rs10025132	1.00[EUR][1000 genomes]
rs10028462	1.00[EUR][1000 genomes]
rs10033192	1.00[EUR][1000 genomes]
rs1072806	1.00[EUR][1000 genomes]
rs11132939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12108601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1484021	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs163075	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1848396	1.00[YRI][hapmap]
rs1848398	1.00[ASW][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs234125	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28578805	1.00[EUR][1000 genomes]
rs28601872	1.00[EUR][1000 genomes]
rs28602395	1.00[EUR][1000 genomes]
rs335967	1.00[ASW][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap]
rs335994	1.00[ASW][hapmap];0.81[LWK][hapmap];0.96[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs337044	1.00[YRI][hapmap]
rs4453902	1.00[ASW][hapmap];0.81[LWK][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4692918	0.90[YRI][hapmap]
rs662762	0.95[YRI][hapmap]
rs6816514	1.00[EUR][1000 genomes]
rs6818039	1.00[EUR][1000 genomes]
rs6819906	1.00[EUR][1000 genomes]
rs6824530	1.00[EUR][1000 genomes]
rs6835263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6846178	1.00[EUR][1000 genomes]
rs6849432	1.00[EUR][1000 genomes]
rs6852958	1.00[EUR][1000 genomes]
rs72984395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72986322	1.00[EUR][1000 genomes]
rs72986325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72986326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72986650	1.00[EUR][1000 genomes]
rs72988232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988242	1.00[EUR][1000 genomes]
rs72988264	1.00[EUR][1000 genomes]
rs72995053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72997054	1.00[EUR][1000 genomes]
rs7666355	1.00[EUR][1000 genomes]
rs7670726	1.00[EUR][1000 genomes]
rs7673087	1.00[EUR][1000 genomes]
rs7675865	1.00[EUR][1000 genomes]
rs7686531	1.00[ASW][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap]
rs7688719	0.84[ASW][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690422	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7694721	1.00[EUR][1000 genomes]
rs877857	1.00[EUR][1000 genomes]
rs877858	1.00[EUR][1000 genomes]
rs988129	1.00[ASW][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs9993592	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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