Variant report

Variant	nsv968552
Chromosome Location	chr8:120988705-120994905
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:120978380..120980894-chr8:120986076..120988850,2	MCF-7	breast:
2	chr8:120886491..120887260-chr8:120992637..120993679,3	MCF-7	breast:
3	chr8:120883348..120885416-chr8:120993271..120996165,2	MCF-7	breast:
4	chr8:120867407..120870404-chr8:120990220..120992815,2	MCF-7	breast:
5	chr8:120981030..120983921-chr8:120987926..120990763,2	K562	blood:
6	chr8:120985045..120986649-chr8:120987660..120991345,3	MCF-7	breast:
7	chr8:120992487..120993376-chr8:121072550..121073500,6	MCF-7	breast:
8	chr8:120993625..120995992-chr8:121085648..121088455,2	MCF-7	breast:
9	chr8:120991897..120993934-chr8:121016274..121018192,2	MCF-7	breast:
10	chr8:120885825..120887524-chr8:120993411..120995153,3	MCF-7	breast:
11	chr8:120884447..120887297-chr8:120988136..120991127,2	MCF-7	breast:
12	chr8:120992589..120993124-chr8:121096758..121097431,2	MCF-7	breast:
13	chr8:120886381..120887161-chr8:120994455..120995241,2	MCF-7	breast:
14	chr8:120992148..120993125-chr8:121096415..121097113,2	MCF-7	breast:
15	chr8:120867034..120868892-chr8:120993667..120996402,2	MCF-7	breast:
16	chr8:120993597..120995121-chr8:121010355..121012159,2	MCF-7	breast:
17	chr8:120885927..120888357-chr8:120992198..120996692,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155792	chromatin interactions
ENSG00000136982	chromatin interactions
ENSG00000245330	chromatin interactions

Extended variants
information (count: 242 )
Associated
traits (count: 140 )

Variant overlapped rSNPs/rCNVs (count:242 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs117868212	chr8:120988710-120988711	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs1914992	chr8:120988715-120988716	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs537291635	chr8:120988786-120988787	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs561346133	chr8:120988797-120988798	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs190920778	chr8:120988853-120988854	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs549989915	chr8:120988858-120988859	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs549004722	chr8:120988878-120988879	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs571497002	chr8:120988915-120988916	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs567580745	chr8:120988944-120988945	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs534694760	chr8:120988946-120988947	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs538877160	chr8:120988957-120988958	Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs547084339	chr8:120989018-120989019	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs565633840	chr8:120989076-120989077	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs535852413	chr8:120989176-120989177	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs140197929	chr8:120989224-120989225	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs79889489	chr8:120989262-120989263	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs371430527	chr8:120989312-120989313	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs111731121	chr8:120989318-120989319	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs12678899	chr8:120989326-120989327	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs545650615	chr8:120989333-120989334	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs145377415	chr8:120989350-120989351	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs372902870	chr8:120989362-120989363	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs148635088	chr8:120989388-120989389	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs62528697	chr8:120989391-120989392	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs368202721	chr8:120989397-120989398	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs151137048	chr8:120989478-120989479	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs550002205	chr8:120989482-120989483	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs12678916	chr8:120989488-120989489	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs370283915	chr8:120989494-120989495	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs547700524	chr8:120989503-120989504	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs565824401	chr8:120989523-120989524	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs535887057	chr8:120989528-120989529	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs76010603	chr8:120989543-120989544	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs187660821	chr8:120989570-120989571	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs192876029	chr8:120989575-120989576	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs184922087	chr8:120989606-120989607	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs111457644	chr8:120989611-120989612	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs140064623	chr8:120989619-120989620	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs112346556	chr8:120989630-120989631	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs538834705	chr8:120989657-120989658	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs368633452	chr8:120989735-120989736	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs554482981	chr8:120989802-120989803	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs187495543	chr8:120989803-120989804	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs908946	chr8:120989805-120989806	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs369500700	chr8:120989822-120989823	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs573514233	chr8:120989845-120989846	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs374056000	chr8:120989846-120989847	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs561217915	chr8:120989952-120989953	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs576617498	chr8:120989973-120989974	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs192341768	chr8:120990046-120990047	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:140)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	17603634	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	20932292	CNVD
Gastric cancer	22539939	CNVD
Breast cancer	22056952	CNVD
Langer-Giedion syndrome	16773131	CNVD
Lung cancer	16740712	CNVD
Mental retardation	16773131	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Langer-Giedion syndrome	22470819	CNVD
Cornelia de Lange syndrome	24599119	CNVD
Gastric cancer	21528007	CNVD
Breast cancer	22532251	CNVD
Cervical cancer	21062161	CNVD
Cancer	21129771	CNVD
benign familial neonatal convulsions	18472482	CNVD
Breast cancer	16417655	CNVD
Astrocytoma	17387387	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	20607354	CNVD
Breast cancer	20814816	CNVD
Colorectal cancer	22486879	CNVD
Breast cancer	17908964	CNVD
Colorectal cancer	20031965	CNVD
Hepatocellular carcinoma	16750200	CNVD
Ovarian cancer	17908964	CNVD
Ovarian cancer	20031965	CNVD
Prostate cancer	20031965	CNVD
Non-small cell lung cancer	17643093	CNVD
Prostate cancer	19242612	CNVD
Colorectal cancer	16774939	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	18628472	CNVD
Malignant melanoma	17260012	CNVD
Breast cancer	18698023	CNVD
Multiple myeloma	16461302	CNVD
Uveal melanoma	20484589	CNVD
head and neck squamous cell carcinoma	16740747	CNVD
Breast cancer	19181860	CNVD
Endometrial cancer	23636398	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	16397240	CNVD
Multiple myeloma	16616336	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Oral squamous cell carcinoma	21853135	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	22341455	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:352 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120968800-120988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:120977800-120994600	Weak transcription	Fetal Lung	lung
3	chr8:120978000-120994800	Weak transcription	Esophagus	oesophagus
4	chr8:120978000-120994800	Weak transcription	Right Ventricle	heart
5	chr8:120978000-121013600	Weak transcription	Gastric	stomach
6	chr8:120978400-120993200	Weak transcription	Primary T cells from cord blood	blood
7	chr8:120978400-120993200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:120979000-120990600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:120979400-120994800	Weak transcription	Left Ventricle	heart
10	chr8:120979600-120988800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:120981600-120992600	Enhancers	Fetal Intestine Large	intestine
12	chr8:120983200-120989800	Weak transcription	Small Intestine	intestine
13	chr8:120983400-120994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:120984200-120990200	Weak transcription	Colonic Mucosa	Colon
15	chr8:120984200-120990400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:120984400-120988800	Weak transcription	Ovary	ovary
17	chr8:120984600-120990400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:120984600-120990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:120984800-120988800	Weak transcription	Pancreas	Pancrea
20	chr8:120984800-120988800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:120985600-120996800	Enhancers	Stomach Mucosa	stomach
22	chr8:120986000-120994800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:120986200-120990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:120986200-120994400	Weak transcription	Right Atrium	heart
25	chr8:120986400-120988800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:120986400-120988800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:120986400-120989800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:120986400-120990200	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:120986400-120990200	Weak transcription	Fetal Thymus	thymus
30	chr8:120986400-120990400	Weak transcription	Fetal Stomach	stomach
31	chr8:120986400-120999600	Weak transcription	Spleen	Spleen
32	chr8:120986600-120988800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:120986800-120990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:120987000-120989200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr8:120987000-120990800	Weak transcription	Adipose Nuclei	Adipose
36	chr8:120987200-120989800	Weak transcription	Brain Angular Gyrus	brain
37	chr8:120987400-120992200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr8:120987600-120989200	Enhancers	Psoas Muscle	Psoas
39	chr8:120987600-120990400	Enhancers	Duodenum Mucosa	Duodenum
40	chr8:120987600-120990400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr8:120987600-120991200	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr8:120987800-120992000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr8:120988000-120988800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:120988200-120989000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr8:120988200-120989400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr8:120988200-120990400	Weak transcription	Placenta	Placenta
47	chr8:120988400-120989200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr8:120988400-120989200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:120988400-120989200	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr8:120988400-120989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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