Variant report

Variant	rs190920778
Chromosome Location	chr8:120988853-120988854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120981030..120983921-chr8:120987926..120990763,2	K562	blood:
2	chr8:120884447..120887297-chr8:120988136..120991127,2	MCF-7	breast:
3	chr8:120985045..120986649-chr8:120987660..120991345,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155792	Chromatin interaction
ENSG00000245330	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv968552	chr8:120988705-120994905	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120977800-120994600	Weak transcription	Fetal Lung	lung
2	chr8:120978000-120994800	Weak transcription	Esophagus	oesophagus
3	chr8:120978000-120994800	Weak transcription	Right Ventricle	heart
4	chr8:120978000-121013600	Weak transcription	Gastric	stomach
5	chr8:120978400-120993200	Weak transcription	Primary T cells from cord blood	blood
6	chr8:120978400-120993200	Weak transcription	Brain Anterior Caudate	brain
7	chr8:120979000-120990600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:120979400-120994800	Weak transcription	Left Ventricle	heart
9	chr8:120981600-120992600	Enhancers	Fetal Intestine Large	intestine
10	chr8:120983200-120989800	Weak transcription	Small Intestine	intestine
11	chr8:120983400-120994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:120984200-120990200	Weak transcription	Colonic Mucosa	Colon
13	chr8:120984200-120990400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:120984600-120990400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:120984600-120990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:120985600-120996800	Enhancers	Stomach Mucosa	stomach
17	chr8:120986000-120994800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:120986200-120990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:120986200-120994400	Weak transcription	Right Atrium	heart
20	chr8:120986400-120989800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:120986400-120990200	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:120986400-120990200	Weak transcription	Fetal Thymus	thymus
23	chr8:120986400-120990400	Weak transcription	Fetal Stomach	stomach
24	chr8:120986400-120999600	Weak transcription	Spleen	Spleen
25	chr8:120986800-120990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:120987000-120989200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:120987000-120990800	Weak transcription	Adipose Nuclei	Adipose
28	chr8:120987200-120989800	Weak transcription	Brain Angular Gyrus	brain
29	chr8:120987400-120992200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:120987600-120989200	Enhancers	Psoas Muscle	Psoas
31	chr8:120987600-120990400	Enhancers	Duodenum Mucosa	Duodenum
32	chr8:120987600-120990400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr8:120987600-120991200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr8:120987800-120992000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr8:120988200-120989000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr8:120988200-120989400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr8:120988200-120990400	Weak transcription	Placenta	Placenta
38	chr8:120988400-120989200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr8:120988400-120989200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr8:120988400-120989200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:120988400-120989200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:120988400-120991200	Enhancers	Liver	Liver
43	chr8:120988400-120991400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr8:120988400-120996800	Enhancers	Fetal Intestine Small	intestine
45	chr8:120988600-120989000	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr8:120988600-120989000	Enhancers	Colon Smooth Muscle	Colon
47	chr8:120988600-120989000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:120988600-120989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr8:120988600-120989200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:120988600-120989200	Enhancers	Brain Cingulate Gyrus	brain

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