Variant report

Variant	nsv969322
Chromosome Location	chr6:117403778-117415162
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117398297..117400947-chr6:117402400..117403953,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373188344	chr6:117406601-117406602	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs546453448	chr6:117406605-117406606	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs369790626	chr6:117406659-117406660	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs528029897	chr6:117406660-117406661	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs13192555	chr6:117406666-117406667	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs535107097	chr6:117406681-117406682	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs2456995	chr6:117406682-117406683	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs188241995	chr6:117406703-117406704	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs193165584	chr6:117406748-117406749	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs539475793	chr6:117406752-117406753	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs185378839	chr6:117406755-117406756	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs368446802	chr6:117406762-117406763	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs551194642	chr6:117408009-117408010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs566613216	chr6:117408043-117408044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12213179	chr6:117408077-117408078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs533829448	chr6:117408081-117408082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs141546738	chr6:117408090-117408091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs537360809	chr6:117408118-117408119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs115756601	chr6:117408139-117408140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs535788788	chr6:117408220-117408221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557279864	chr6:117408224-117408225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs544510813	chr6:117408252-117408253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs146173944	chr6:117408274-117408275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs186567516	chr6:117408282-117408283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs79481885	chr6:117408378-117408379	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Hypoplastic	20877625	CNVD
Hypotonia	20877625	CNVD
Mental retardation	20877625	CNVD
Microcephaly	20877625	CNVD
brachycephaly	20877625	CNVD
epicanthic folds	20877625	CNVD
micrognathia	20877625	CNVD
Urothelial carcinoma	21177765	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Salivary gland tumor	18059337	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Metastatic melanoma	18483359	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Epilepsy	22083797	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117406600-117406800	Active TSS	Sigmoid Colon	Sigmoid Colon
2	chr6:117408000-117408400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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