Variant report

Variant	nsv969448
Chromosome Location	chr6:133188967-133190432
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf192-2	chr6:133189357-133189998	NONHSAT114983

Extended variants
information (count: 49 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572356357	chr6:133188976-133188977	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541380241	chr6:133188977-133188978	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs564443607	chr6:133189025-133189026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs34698096	chr6:133189030-133189031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs533443425	chr6:133189069-133189070	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs550141083	chr6:133189141-133189142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563531537	chr6:133189167-133189168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs563565778	chr6:133189198-133189199	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs549269343	chr6:133189199-133189200	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs565993693	chr6:133189225-133189226	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs530942157	chr6:133189230-133189231	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs527305507	chr6:133189237-133189238	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs547343305	chr6:133189248-133189249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs570483894	chr6:133189326-133189327	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143606539	chr6:133189361-133189362	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs373793447	chr6:133189372-133189373	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs34987255	chr6:133189374-133189375	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs138851027	chr6:133189452-133189453	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs570963073	chr6:133189456-133189457	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs149371366	chr6:133189477-133189478	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs569866485	chr6:133189489-133189490	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs73545946	chr6:133189494-133189495	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs76741607	chr6:133189517-133189518	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs147519164	chr6:133189549-133189550	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs78480943	chr6:133189593-133189594	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs558116695	chr6:133189594-133189595	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs558498376	chr6:133189597-133189598	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs76868538	chr6:133189600-133189601	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs578089023	chr6:133189638-133189639	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs140048662	chr6:133189721-133189722	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs543507826	chr6:133189726-133189727	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs563395861	chr6:133189775-133189776	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs74709990	chr6:133189797-133189798	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs541037519	chr6:133189821-133189822	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs546519867	chr6:133189849-133189850	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs542780409	chr6:133189870-133189871	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs144118191	chr6:133189896-133189897	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs188523724	chr6:133189897-133189898	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs547114811	chr6:133189907-133189908	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs570421950	chr6:133189930-133189931	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs568242410	chr6:133189989-133189990	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs549908756	chr6:133190048-133190049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs569731286	chr6:133190063-133190064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs192946316	chr6:133190065-133190066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs535413921	chr6:133190081-133190082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs555577651	chr6:133190098-133190099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565868124	chr6:133190161-133190162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs534907718	chr6:133190167-133190168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs147313747	chr6:133190199-133190200	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133187800-133189000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:133187800-133190200	Enhancers	Fetal Heart	heart
3	chr6:133188200-133189000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:133188200-133189000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:133188800-133189800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:133189000-133189400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:133189400-133189800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133189800-133190200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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