Variant report

Variant	rs73545946
Chromosome Location	chr6:133189494-133189495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf192-2	chr6:133189357-133189998	NONHSAT114983

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1824361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327284	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35121891	1.00[EUR][1000 genomes]
rs4569990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786581	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830698	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57172226	1.00[EUR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903874	1.00[EUR][1000 genomes]
rs58591697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58994969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597300	1.00[EUR][1000 genomes]
rs60264875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61033120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554467	1.00[EUR][1000 genomes]
rs73558395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv969448	chr6:133188967-133190432	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133187800-133190200	Enhancers	Fetal Heart	heart
2	chr6:133188800-133189800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:133189400-133189800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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