Variant report

Variant	rs1824361
Chromosome Location	chr6:133231385-133231386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2327284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569990	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786581	1.00[AMR][1000 genomes]
rs56830698	1.00[AMR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes]
rs58591697	1.00[AMR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes]
rs58994969	1.00[AMR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes]
rs60264875	1.00[AMR][1000 genomes]
rs61033120	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244629	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61292521	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545933	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545939	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545957	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133229200-133233600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:133229400-133233400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:133229400-133239400	Weak transcription	Fetal Lung	lung
4	chr6:133229800-133233400	Weak transcription	Osteobl	bone
5	chr6:133229800-133233600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:133229800-133234000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:133229800-133234200	Weak transcription	NH-A	brain
8	chr6:133229800-133234400	Weak transcription	HSMM	muscle
9	chr6:133230600-133233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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