Variant report

Variant	rs73547657
Chromosome Location	chr6:133233566-133233567
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133232161..133234694-chr6:133238799..133240675,2	K562	blood:
2	chr6:133232577..133234235-chr6:133238890..133241749,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1824361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35121891	1.00[EUR][1000 genomes]
rs4569990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57172226	1.00[EUR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903874	1.00[EUR][1000 genomes]
rs58591697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58994969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597300	1.00[EUR][1000 genomes]
rs60264875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61033120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244629	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545937	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545939	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554467	1.00[EUR][1000 genomes]
rs73558395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133229200-133233600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:133229400-133239400	Weak transcription	Fetal Lung	lung
3	chr6:133229800-133233600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:133229800-133234000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:133229800-133234200	Weak transcription	NH-A	brain
6	chr6:133229800-133234400	Weak transcription	HSMM	muscle
7	chr6:133233400-133234000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:133233400-133234400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133233400-133234600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:133233400-133234600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133233400-133234600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:133233400-133234600	Enhancers	Psoas Muscle	Psoas
13	chr6:133233400-133234800	Enhancers	Osteobl	bone

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