Variant report

Variant	rs73545937
Chromosome Location	chr6:133186357-133186358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133184927..133187651-chr6:133189830..133192430,2	K562	blood:

Variant related genes	Relation type
ENSG00000220557	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1824361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327284	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35121891	1.00[EUR][1000 genomes]
rs4569990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56786581	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830698	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57172226	1.00[EUR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903874	1.00[EUR][1000 genomes]
rs58591697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58994969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597300	1.00[EUR][1000 genomes]
rs60264875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61033120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554467	1.00[EUR][1000 genomes]
rs73558395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133185000-133186600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:133185200-133187200	Enhancers	GM12878-XiMat	blood
3	chr6:133185400-133186800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:133185800-133188000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:133186000-133186600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:133186000-133186600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:133186000-133186600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:133186200-133186400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:133186200-133186400	Enhancers	Fetal Heart	heart
10	chr6:133186200-133186800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:133186200-133186800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:133186200-133186800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:133186200-133186800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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