Variant report
| Variant | rs57212631 |
|---|---|
| Chromosome Location | chr6:133215681-133215682 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:133215147..133217831-chr6:133244049..133245701,2 | MCF-7 | breast: | |
| 2 | chr6:133215054..133218379-chr6:133238674..133241555,3 | MCF-7 | breast: | |
| 3 | chr6:133150152..133152401-chr6:133214566..133217408,2 | MCF-7 | breast: | |
| 4 | chr6:133139979..133142138-chr6:133214137..133215920,2 | MCF-7 | breast: | |
| 5 | chr6:133214987..133216663-chr6:133252701..133254390,2 | MCF-7 | breast: | |
| 6 | chr6:133134365..133138473-chr6:133214191..133217735,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000206754 | Chromatin interaction |
| ENSG00000200534 | Chromatin interaction |
| ENSG00000221500 | Chromatin interaction |
| ENSG00000112306 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1824361 | 1.00[AMR][1000 genomes] |
| rs2327284 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35121891 | 1.00[EUR][1000 genomes] |
| rs4569990 | 1.00[AMR][1000 genomes] |
| rs56786581 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56830698 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57172226 | 1.00[EUR][1000 genomes] |
| rs57903874 | 1.00[EUR][1000 genomes] |
| rs58591697 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58644652 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58940825 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58994969 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59585087 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59597300 | 1.00[EUR][1000 genomes] |
| rs60264875 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61033120 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61244629 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61292521 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545933 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545937 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545939 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545946 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545957 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73547657 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73554467 | 1.00[EUR][1000 genomes] |
| rs73558395 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv869855 | chr6:133190265-133244259 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
