Variant report
| Variant | rs4569990 |
|---|---|
| Chromosome Location | chr6:133213842-133213843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:133212290..133214095-chr6:133220158..133223088,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RPS12-4 | chr6:133213063-133214958 | NONHSAT114984 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1824361 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2327284 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56786581 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56830698 | 1.00[AMR][1000 genomes] |
| rs57212631 | 1.00[AMR][1000 genomes] |
| rs58591697 | 1.00[AMR][1000 genomes] |
| rs58644652 | 1.00[AMR][1000 genomes] |
| rs58940825 | 1.00[AMR][1000 genomes] |
| rs58949949 | 0.91[EUR][1000 genomes] |
| rs58994969 | 1.00[AMR][1000 genomes] |
| rs59585087 | 1.00[AMR][1000 genomes] |
| rs60264875 | 1.00[AMR][1000 genomes] |
| rs61033120 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61244629 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61292521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73545933 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73545937 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73545939 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73545946 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73545957 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73547657 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73558395 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv869855 | chr6:133190265-133244259 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
