Variant report

Variant	rs73558395
Chromosome Location	chr6:133157991-133157992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133148667..133150225-chr6:133157678..133160436,2	MCF-7	breast:
2	chr6:133141835..133144313-chr6:133156927..133159674,3	K562	blood:
3	chr6:133133683..133137845-chr6:133157752..133163297,5	K562	blood:
4	chr6:133151897..133155334-chr6:133156928..133160559,4	K562	blood:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1824361	1.00[AMR][1000 genomes]
rs2327284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35121891	1.00[EUR][1000 genomes]
rs4569990	1.00[AMR][1000 genomes]
rs56786581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57172226	1.00[EUR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903874	1.00[EUR][1000 genomes]
rs58591697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58994969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597300	1.00[EUR][1000 genomes]
rs60264875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61033120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554467	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	esv3403441	chr6:133157730-133160114	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3359825	chr6:133157739-133160116	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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